IL_7PIB_178
3D structure
- PDB id
- 7PIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UCCCCAAAAU*AUUA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIB_178 not in the Motif Atlas
- Geometric match to IL_1MFQ_004
- Geometric discrepancy: 0.3518
- The information below is about IL_1MFQ_004
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
7PIB|1|3|U|1040
7PIB|1|3|C|1041
7PIB|1|3|C|1042
7PIB|1|3|C|1043
7PIB|1|3|C|1044
7PIB|1|3|A|1045
7PIB|1|3|A|1046
7PIB|1|3|A|1047
7PIB|1|3|A|1048
7PIB|1|3|U|1049
*
7PIB|1|3|A|1183
7PIB|1|3|U|1184
7PIB|1|3|U|1185
7PIB|1|3|A|1186
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain i
- 50S ribosomal protein L13
- Chain p
- 50S ribosomal protein L20
Coloring options: