IL_7PIR_009
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- UGUGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIR_009 not in the Motif Atlas
- Geometric match to IL_1UN6_004
- Geometric discrepancy: 0.2778
- The information below is about IL_1UN6_004
- Detailed Annotation
- 7x6 Sarcin-Ricin with UU cWW pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_24254.1
- Basepair signature
- cWW-cWW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
7PIR|1|3|U|243
7PIR|1|3|G|244
7PIR|1|3|U|245
7PIR|1|3|G|246
7PIR|1|3|U|247
7PIR|1|3|A|248
7PIR|1|3|G|249
*
7PIR|1|3|C|257
7PIR|1|3|G|258
7PIR|1|3|A|259
7PIR|1|3|A|260
7PIR|1|3|A|261
7PIR|1|3|G|262
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L35
- Chain k
- 50S ribosomal protein L15
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