IL_7PIR_019

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7PIR|1|3|G|836, 7PIR|1|3|G|840

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_019 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.3498

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7PIR|1|3|G|709
7PIR|1|3|A|710
7PIR|1|3|A|711
7PIR|1|3|A|712
7PIR|1|3|C|713
*
7PIR|1|3|G|834
7PIR|1|3|U|835
7PIR|1|3|G|836
7PIR|1|3|A|837
7PIR|1|3|U|838
7PIR|1|3|A|839
7PIR|1|3|G|840
7PIR|1|3|C|841

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain k

50S ribosomal protein L15