IL_7PIR_021

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

7PIR|1|3|G|764

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_021 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.3086

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7PIR|1|3|U|737
7PIR|1|3|U|738
7PIR|1|3|G|739
7PIR|1|3|A|740
7PIR|1|3|A|741
7PIR|1|3|G|742
*
7PIR|1|3|U|759
7PIR|1|3|G|760
7PIR|1|3|G|761
7PIR|1|3|A|762
7PIR|1|3|G|763
7PIR|1|3|G|764
7PIR|1|3|A|765

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2