IL_7PIR_041

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

7PIR|1|3|G|1278

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_041 not in the Motif Atlas

Geometric match to IL_5J7L_286

Geometric discrepancy: 0.2155

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

7PIR|1|3|C|1227
7PIR|1|3|G|1228
7PIR|1|3|U|1229
*
7PIR|1|3|A|1277
7PIR|1|3|G|1278
7PIR|1|3|U|1279
7PIR|1|3|G|1280

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain k

50S ribosomal protein L15

Chain p

50S ribosomal protein L20