IL_7PIR_066

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UUAAAG*CUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_066 not in the Motif Atlas

Geometric match to IL_4V9F_057

Geometric discrepancy: 0.3784

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7PIR|1|3|U|1858
7PIR|1|3|U|1859
7PIR|1|3|A|1860
7PIR|1|3|A|1861
7PIR|1|3|A|1862
7PIR|1|3|G|1863
*
7PIR|1|3|C|1893
7PIR|1|3|U|1894
7PIR|1|3|G|1895
7PIR|1|3|A|1896
7PIR|1|3|A|1897
7PIR|1|3|G|1898

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA