IL_7PIR_071
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- CGAAAUUCCUAG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 7PIR|1|3|A|1945, 7PIR|1|3|A|1951, 7PIR|1|3|C|1970
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIR_071 not in the Motif Atlas
- Geometric match to IL_5TBW_090
- Geometric discrepancy: 0.322
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7PIR|1|3|C|1941
7PIR|1|3|G|1942
7PIR|1|3|A|1943
7PIR|1|3|A|1944
7PIR|1|3|A|1945
7PIR|1|3|U|1946
7PIR|1|3|U|1947
7PIR|1|3|C|1948
7PIR|1|3|C|1949
7PIR|1|3|U|1950
7PIR|1|3|A|1951
7PIR|1|3|G|1952
*
7PIR|1|3|C|1968
7PIR|1|3|C|1969
7PIR|1|3|C|1970
7PIR|1|3|G|1971
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Small subunit ribosomal RNA; SSU rRNA
- Chain 6
- Transfer RNA; tRNA
- Chain a
- 50S ribosomal protein L2
Coloring options: