IL_7PIR_120

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7PIR|1|5|U|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_120 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2647

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7PIR|1|5|G|133
7PIR|1|5|G|134
7PIR|1|5|A|135
7PIR|1|5|U|136
7PIR|1|5|A|137
7PIR|1|5|A|138
7PIR|1|5|C|139
*
7PIR|1|5|G|154
7PIR|1|5|C|155
7PIR|1|5|U|156
7PIR|1|5|A|157
7PIR|1|5|A|158
7PIR|1|5|U|159
7PIR|1|5|A|160
7PIR|1|5|C|161

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain S

30S ribosomal protein S20