IL_7PIR_126

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UGA*UUGA

Length

7 nucleotides

Bulged bases

7PIR|1|5|G|384

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_126 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3688

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7PIR|1|5|U|371
7PIR|1|5|G|372
7PIR|1|5|A|373
*
7PIR|1|5|U|382
7PIR|1|5|U|383
7PIR|1|5|G|384
7PIR|1|5|A|385

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S16