IL_7PIR_133
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7PIR|1|5|G|528, 7PIR|1|5|A|530, 7PIR|1|5|U|532
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIR_133 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.4858
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7PIR|1|5|G|513
7PIR|1|5|U|514
7PIR|1|5|G|515
7PIR|1|5|C|516
7PIR|1|5|C|517
7PIR|1|5|A|518
7PIR|1|5|G|519
*
7PIR|1|5|C|526
7PIR|1|5|G|527
7PIR|1|5|G|528
7PIR|1|5|U|529
7PIR|1|5|A|530
7PIR|1|5|A|531
7PIR|1|5|U|532
7PIR|1|5|A|533
7PIR|1|5|C|534
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain B
- 30S ribosomal protein S3
- Chain C
- 30S ribosomal protein S4
- Chain K
- 30S ribosomal protein S12
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