IL_7PIR_138

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_138 not in the Motif Atlas

Geometric match to IL_7KGA_006

Geometric discrepancy: 0.3107

The information below is about IL_7KGA_006

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_90176.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

7PIR|1|5|U|596
7PIR|1|5|C|597
*
7PIR|1|5|G|636
7PIR|1|5|A|637
7PIR|1|5|A|638

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S8

Chain P

30S ribosomal protein S17