IL_7PIR_147
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- GUAGUACAUU*AAUGAAAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIR_147 not in the Motif Atlas
- Geometric match to IL_6UFM_002
- Geometric discrepancy: 0.3337
- The information below is about IL_6UFM_002
- Detailed Annotation
- 10x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_22278.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
7PIR|1|5|G|881
7PIR|1|5|U|882
7PIR|1|5|A|883
7PIR|1|5|G|884
7PIR|1|5|U|885
7PIR|1|5|A|886
7PIR|1|5|C|887
7PIR|1|5|A|888
7PIR|1|5|U|889
7PIR|1|5|U|890
*
7PIR|1|5|A|897
7PIR|1|5|A|898
7PIR|1|5|U|899
7PIR|1|5|G|900
7PIR|1|5|A|901
7PIR|1|5|A|902
7PIR|1|5|A|903
7PIR|1|5|C|904
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain K
- 30S ribosomal protein S12
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