IL_7PIR_158

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_158 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.2789

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7PIR|1|5|C|1277
7PIR|1|5|G|1278
7PIR|1|5|G|1279
7PIR|1|5|A|1280
7PIR|1|5|U|1281
7PIR|1|5|U|1282
*
7PIR|1|5|A|1303
7PIR|1|5|U|1304
7PIR|1|5|G|1305
7PIR|1|5|A|1306
7PIR|1|5|A|1307
7PIR|1|5|G|1308

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S13