IL_7PIR_159

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7PIR|1|5|C|1375, 7PIR|1|5|A|1478

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_159 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.2682

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7PIR|1|5|C|1374
7PIR|1|5|C|1375
7PIR|1|5|G|1376
*
7PIR|1|5|C|1476
7PIR|1|5|A|1477
7PIR|1|5|A|1478
7PIR|1|5|G|1479

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA