IL_7PIR_161

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_161 not in the Motif Atlas

Geometric match to IL_2OE5_001

Geometric discrepancy: 0.1578

The information below is about IL_2OE5_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

7PIR|1|5|G|1380
7PIR|1|5|U|1381
7PIR|1|5|C|1382
*
7PIR|1|5|G|1469
7PIR|1|5|U|1470
7PIR|1|5|C|1471

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain 3

Large subunit ribosomal RNA; LSU rRNA

Chain 6

Transfer RNA; tRNA

Chain 8

Transfer RNA; tRNA

Chain K

30S ribosomal protein S12