IL_7PIR_165

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UAAU*AGCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_165 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3103

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7PIR|1|5|U|1399
7PIR|1|5|A|1400
7PIR|1|5|A|1401
7PIR|1|5|U|1402
*
7PIR|1|5|A|1448
7PIR|1|5|G|1449
7PIR|1|5|C|1450
7PIR|1|5|A|1451

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain 3

Large subunit ribosomal RNA; LSU rRNA

Chain j

50S ribosomal protein L14