IL_7PIR_208
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- GAGGUAA*UGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIR_208 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.3239
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7PIR|1|3|G|892
7PIR|1|3|A|893
7PIR|1|3|G|894
7PIR|1|3|G|895
7PIR|1|3|U|896
7PIR|1|3|A|897
7PIR|1|3|A|898
*
7PIR|1|3|U|952
7PIR|1|3|G|953
7PIR|1|3|A|954
7PIR|1|3|A|955
7PIR|1|3|U|956
7PIR|1|3|G|957
7PIR|1|3|C|958
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 5S ribosomal RNA; 5S rRNA
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L27
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