3D structure

PDB id
7PJS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.35 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
7PJS|1|A|A|1801, 7PJS|1|A|C|1816, 7PJS|1|A|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7PJS_067 not in the Motif Atlas
Homologous match to IL_5J7L_313
Geometric discrepancy: 0.0647
The information below is about IL_5J7L_313
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

7PJS|1|A|U|1798
7PJS|1|A|G|1799
7PJS|1|A|C|1800
7PJS|1|A|A|1801
7PJS|1|A|A|1802
7PJS|1|A|A|1803
7PJS|1|A|C|1804
*
7PJS|1|A|G|1813
7PJS|1|A|G|1814
7PJS|1|A|A|1815
7PJS|1|A|C|1816
7PJS|1|A|G|1817
7PJS|1|A|U|1818
7PJS|1|A|A|1819
7PJS|1|A|U|1820
7PJS|1|A|A|1821

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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