IL_7PJS_067

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7PJS|1|A|A|1801, 7PJS|1|A|C|1816, 7PJS|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJS_067 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0647

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7PJS|1|A|U|1798
7PJS|1|A|G|1799
7PJS|1|A|C|1800
7PJS|1|A|A|1801
7PJS|1|A|A|1802
7PJS|1|A|A|1803
7PJS|1|A|C|1804
*
7PJS|1|A|G|1813
7PJS|1|A|G|1814
7PJS|1|A|A|1815
7PJS|1|A|C|1816
7PJS|1|A|G|1817
7PJS|1|A|U|1818
7PJS|1|A|A|1819
7PJS|1|A|U|1820
7PJS|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2