IL_7PJS_140

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

7PJS|1|a|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJS_140 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.069

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7PJS|1|a|U|605
7PJS|1|a|G|606
7PJS|1|a|A|607
7PJS|1|a|A|608
7PJS|1|a|A|609
7PJS|1|a|U|610
7PJS|1|a|C|611
7PJS|1|a|C|612
*
7PJS|1|a|G|628
7PJS|1|a|A|629
7PJS|1|a|A|630
7PJS|1|a|C|631
7PJS|1|a|U|632
7PJS|1|a|G|633

Current chains

Chain a

16S ribosomal RNA

Nearby chains