IL_7PJU_067

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7PJU|1|A|A|1801, 7PJU|1|A|C|1816, 7PJU|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJU_067 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0824

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7PJU|1|A|U|1798
7PJU|1|A|G|1799
7PJU|1|A|C|1800
7PJU|1|A|A|1801
7PJU|1|A|A|1802
7PJU|1|A|A|1803
7PJU|1|A|C|1804
*
7PJU|1|A|G|1813
7PJU|1|A|G|1814
7PJU|1|A|A|1815
7PJU|1|A|C|1816
7PJU|1|A|G|1817
7PJU|1|A|U|1818
7PJU|1|A|A|1819
7PJU|1|A|U|1820
7PJU|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA