IL_7PJV_099

3D structure

PDB id

7PJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

7PJV|1|A|U|2689, 7PJV|1|A|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJV_099 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0682

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7PJV|1|A|U|2687
7PJV|1|A|G|2688
7PJV|1|A|U|2689
7PJV|1|A|U|2690
7PJV|1|A|C|2691
*
7PJV|1|A|G|2718
7PJV|1|A|G|2719
7PJV|1|A|U|2720
7PJV|1|A|A|2721
7PJV|1|A|G|2722

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19