IL_7PJX_096

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7PJX|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJX_096 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.093

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7PJX|1|A|C|2636
7PJX|1|A|U|2637
7PJX|1|A|G|2638
7PJX|1|A|A|2639
7PJX|1|A|G|2640
*
7PJX|1|A|C|2774
7PJX|1|A|G|2775
7PJX|1|A|A|2776
7PJX|1|A|G|2777
7PJX|1|A|A|2778
7PJX|1|A|U|2779
7PJX|1|A|G|2780
7PJX|1|A|A|2781
7PJX|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13