3D structure

PDB id
7PJZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
6 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7PJZ_006 not in the Motif Atlas
Geometric match to IL_7A0S_045
Geometric discrepancy: 0.3976
The information below is about IL_7A0S_045
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_62167.1
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
18

Unit IDs

7PJZ|1|A|G|188
7PJZ|1|A|G|189
7PJZ|1|A|A|190
7PJZ|1|A|A|191
7PJZ|1|A|C|192
7PJZ|1|A|U|193
7PJZ|1|A|G|194
*
7PJZ|1|A|C|201
7PJZ|1|A|U|202
7PJZ|1|A|A|203
7PJZ|1|A|A|204
7PJZ|1|A|G|205
7PJZ|1|A|U|206
7PJZ|1|A|A|207
7PJZ|1|A|C|208

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain L
50S ribosomal protein L15
Chain X
50S ribosomal protein L28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2311 s