IL_7PKQ_018

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAAA*UCA

Length

7 nucleotides

Bulged bases

7PKQ|1|3|A|118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_018 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.2885

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7PKQ|1|3|U|116
7PKQ|1|3|A|117
7PKQ|1|3|A|118
7PKQ|1|3|A|119
*
7PKQ|1|3|U|193
7PKQ|1|3|C|194
7PKQ|1|3|A|195

Current chains

Chain 3

S3 rRNA

Nearby chains

Chain o

uS15m

Chain r

bS18m