IL_7PKQ_032
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UUG*UCAUCA
- Length
- 9 nucleotides
- Bulged bases
- 7PKQ|1|4|A|89
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PKQ_032 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.2719
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7PKQ|1|4|U|15
7PKQ|1|4|U|16
7PKQ|1|4|G|17
*
7PKQ|1|4|U|87
7PKQ|1|4|C|88
7PKQ|1|4|A|89
7PKQ|1|4|U|90
7PKQ|1|4|C|91
7PKQ|1|4|A|92
Current chains
- Chain 4
- S4 rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Ribosomal_S3_C domain-containing protein
- Chain j
- Ribosomal_S10 domain-containing protein
- Chain n
- Mitochondrial ribosomal protein S14
- Chain y
- mS33
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