IL_7PO1_015

3D structure

PDB id

7PO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of human mitochondrial ribosome small subunit with IF3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

7PO1|1|A|C|904, 7PO1|1|A|C|906

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PO1_015 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1088

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7PO1|1|A|G|887
7PO1|1|A|U|888
7PO1|1|A|G|889
7PO1|1|A|C|890
7PO1|1|A|C|891
7PO1|1|A|A|892
7PO1|1|A|G|893
*
7PO1|1|A|C|900
7PO1|1|A|G|901
7PO1|1|A|G|902
7PO1|1|A|U|903
7PO1|1|A|C|904
7PO1|1|A|A|905
7PO1|1|A|C|906
7PO1|1|A|A|907
7PO1|1|A|C|908

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial

Chain Z

28S ribosomal protein S33, mitochondrial