IL_7PO3_015

3D structure

PDB id

7PO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

7PO3|1|A|C|904, 7PO3|1|A|C|906

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PO3_015 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1079

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7PO3|1|A|G|887
7PO3|1|A|U|888
7PO3|1|A|G|889
7PO3|1|A|C|890
7PO3|1|A|C|891
7PO3|1|A|A|892
7PO3|1|A|G|893
*
7PO3|1|A|C|900
7PO3|1|A|G|901
7PO3|1|A|G|902
7PO3|1|A|U|903
7PO3|1|A|C|904
7PO3|1|A|A|905
7PO3|1|A|C|906
7PO3|1|A|A|907
7PO3|1|A|C|908

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial

Chain Z

28S ribosomal protein S33, mitochondrial