IL_7PO3_028

3D structure

PDB id

7PO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

AUAUC*GCCCU

Length

10 nucleotides

Bulged bases

7PO3|1|A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PO3_028 not in the Motif Atlas

Geometric match to IL_8C3A_449

Geometric discrepancy: 0.235

The information below is about IL_8C3A_449

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

7PO3|1|A|A|1186
7PO3|1|A|U|1187
7PO3|1|A|A|1188
7PO3|1|A|U|1189
7PO3|1|A|C|1190
*
7PO3|1|A|G|1464
7PO3|1|A|C|1465
7PO3|1|A|C|1466
7PO3|1|A|C|1467
7PO3|1|A|U|1468

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 2

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1

Chain F

28S ribosomal protein S7, mitochondrial

Chain G

28S ribosomal protein S9, mitochondrial