IL_8C3A_449

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8C3A|1|CM|C|1143, 8C3A|1|CM|C|1144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

8C3A|1|CM|A|1142
8C3A|1|CM|C|1143
8C3A|1|CM|C|1144
8C3A|1|CM|A|1145
*
8C3A|1|CM|U|1604
8C3A|1|CM|C|1605
8C3A|1|CM|C|1606
8C3A|1|CM|C|1607
8C3A|1|CM|U|1608

Current chains

Chain CM

18S

Nearby chains

Chain CS

Ribosomal protein S7

Chain DD

40S ribosomal protein S16

Chain DN

40S ribosomal protein S26

Chain DP

40S ribosomal protein S28-B