IL_7PO4_004

3D structure

PDB id

7PO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PO4_004 not in the Motif Atlas

Geometric match to IL_5J7L_257

Geometric discrepancy: 0.0955

The information below is about IL_5J7L_257

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7PO4|1|A|C|1845
7PO4|1|A|C|1846
7PO4|1|A|U|1847
*
7PO4|1|A|A|1856
7PO4|1|A|U|1857
7PO4|1|A|G|1858

Current chains

Chain A

16SrRNA

Nearby chains

Chain R

39S ribosomal protein L20, mitochondrial

Chain S

39S ribosomal protein L21, mitochondrial