IL_7PWG_016
3D structure
- PDB id
- 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GA(A2M)AG*CUGGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 7PWG|1|1|G|649, 7PWG|1|1|G|653
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PWG_016 not in the Motif Atlas
- Homologous match to IL_5TBW_028
- Geometric discrepancy: 0.0852
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7PWG|1|1|G|521
7PWG|1|1|A|522
7PWG|1|1|A2M|523
7PWG|1|1|A|524
7PWG|1|1|G|525
*
7PWG|1|1|C|647
7PWG|1|1|U|648
7PWG|1|1|G|649
7PWG|1|1|G|650
7PWG|1|1|U|651
7PWG|1|1|A|652
7PWG|1|1|G|653
7PWG|1|1|C|654
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- Ribosomal protein L27a
- Chain j
- Ribosomal protein L37
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