IL_7PWG_057

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

7PWG|1|1|A|1729, 7PWG|1|1|A|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_057 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.097

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7PWG|1|1|U|1687
7PWG|1|1|G|1688
*
7PWG|1|1|U|1728
7PWG|1|1|A|1729
7PWG|1|1|A|1730
7PWG|1|1|A|1731

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain A

Ribosomal protein L2