IL_7PWG_071
3D structure
- PDB id
- 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CAG*CGCGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PWG_071 not in the Motif Atlas
- Geometric match to IL_5TBW_099
- Geometric discrepancy: 0.17
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
7PWG|1|1|C|2089
7PWG|1|1|A|2090
7PWG|1|1|G|2091
*
7PWG|1|1|C|2109
7PWG|1|1|G|2110
7PWG|1|1|C|2111
7PWG|1|1|G|2112
7PWG|1|1|G|2113
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Ribosomal protein L5
- Chain J
- Ribosomal protein L11
- Chain T
- Ribosomal protein L21
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