IL_7PWG_085

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCAG*CCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_085 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.3143

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7PWG|1|1|C|2421
7PWG|1|1|C|2422
7PWG|1|1|A|2423
7PWG|1|1|G|2424
*
7PWG|1|1|C|2554
7PWG|1|1|C|2555
7PWG|1|1|G|2556
7PWG|1|1|G|2557

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B

Ribosomal protein L3

Chain O

Ribosomal protein L13a