IL_7PWO_008
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CGCC*GCG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PWO_008 not in the Motif Atlas
- Geometric match to IL_7RQB_031
- Geometric discrepancy: 0.3282
- The information below is about IL_7RQB_031
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_46796.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
7PWO|1|1|C|279
7PWO|1|1|G|280
7PWO|1|1|C|281
7PWO|1|1|C|282
*
7PWO|1|42|G|32
7PWO|1|42|C|33
7PWO|1|42|G|34
Current chains
- Chain 1
- rRNA 28S
- Chain 42
- rRNA 5.8S
Nearby chains
- Chain L2
- 60S ribosomal protein L13
- Chain N2
- Ribosomal protein L15
- Chain j2
- Ribosomal protein L37
Coloring options: