IL_7PWO_024
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PWO_024 not in the Motif Atlas
- Geometric match to IL_7RQB_027
- Geometric discrepancy: 0.0856
- The information below is about IL_7RQB_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.1
- Basepair signature
- cWW-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7PWO|1|1|C|707
7PWO|1|1|G|708
7PWO|1|1|U|709
7PWO|1|1|A|710
7PWO|1|1|G|711
*
7PWO|1|1|C|764
7PWO|1|1|G|765
7PWO|1|1|A|766
7PWO|1|1|A|767
7PWO|1|1|G|768
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain F2
- Ribosomal protein L7
- Chain I2
- Ribosomal protein L10
- Chain T2
- Ribosomal protein L21
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