IL_7PWO_048

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

C(OMG)C*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_048 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1189

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7PWO|1|1|C|1519
7PWO|1|1|OMG|1520
7PWO|1|1|C|1521
*
7PWO|1|1|G|1832
7PWO|1|1|C|1833
7PWO|1|1|G|1834

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B2

Ribosomal protein L3

Chain d2

Ribosomal protein L31B