IL_7PWO_055
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CGAGGG*CGCUGGCG
- Length
- 14 nucleotides
- Bulged bases
- 7PWO|1|1|G|1647, 7PWO|1|1|C|1662, 7PWO|1|1|C|1666
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PWO_055 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1445
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7PWO|1|1|C|1644
7PWO|1|1|G|1645
7PWO|1|1|A|1646
7PWO|1|1|G|1647
7PWO|1|1|G|1648
7PWO|1|1|G|1649
*
7PWO|1|1|C|1660
7PWO|1|1|G|1661
7PWO|1|1|C|1662
7PWO|1|1|U|1663
7PWO|1|1|G|1664
7PWO|1|1|G|1665
7PWO|1|1|C|1666
7PWO|1|1|G|1667
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A2
- Ribosomal protein L2
- Chain p2
- Ribosomal protein L37a
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