IL_7PWO_063

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_063 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.0906

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7PWO|1|1|G|1878
7PWO|1|1|C|1879
7PWO|1|1|G|1880
7PWO|1|1|G|1881
*
7PWO|1|1|U|2407
7PWO|1|1|A|2408
7PWO|1|1|C|2409

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B2

Ribosomal protein L3

Chain O2

Ribosomal protein L13a