IL_7PWO_072

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_072 not in the Motif Atlas

Geometric match to IL_1U9S_007

Geometric discrepancy: 0.1105

The information below is about IL_1U9S_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7PWO|1|1|G|2091
7PWO|1|1|C|2092
7PWO|1|1|G|2093
*
7PWO|1|1|C|2107
7PWO|1|1|C|2108
7PWO|1|1|C|2109

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain D2

Ribosomal protein L5

Chain J2

Ribosomal protein L11