IL_7PWO_075

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGCU*GAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_075 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.0788

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7PWO|1|1|G|2245
7PWO|1|1|G|2246
7PWO|1|1|C|2247
7PWO|1|1|U|2248
*
7PWO|1|1|G|2285
7PWO|1|1|A|2286
7PWO|1|1|U|2287
7PWO|1|1|C|2288
7PWO|1|1|C|2289

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain I2

Ribosomal protein L10

Chain b2

60S ribosomal protein L29