IL_7PWO_086
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CCAGUAC*GGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PWO_086 not in the Motif Atlas
- Geometric match to IL_4V9F_092
- Geometric discrepancy: 0.1086
- The information below is about IL_4V9F_092
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
7PWO|1|1|C|2436
7PWO|1|1|C|2437
7PWO|1|1|A|2438
7PWO|1|1|G|2439
7PWO|1|1|U|2440
7PWO|1|1|A|2441
7PWO|1|1|C|2442
*
7PWO|1|1|G|2447
7PWO|1|1|G|2448
7PWO|1|1|A|2449
7PWO|1|1|A|2450
7PWO|1|1|C|2451
7PWO|1|1|G|2452
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain H2
- Ribosomal protein L6
- Chain V2
- Ribosomal protein L23
- Chain m2
- Ubiquitin/Ribosomal protein L40e
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