IL_7PWO_109

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAG*CGACUC

Length

9 nucleotides

Bulged bases

7PWO|1|2|U|292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_109 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.3087

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7PWO|1|2|G|275
7PWO|1|2|A|276
7PWO|1|2|G|277
*
7PWO|1|2|C|288
7PWO|1|2|G|289
7PWO|1|2|A|290
7PWO|1|2|C|291
7PWO|1|2|U|292
7PWO|1|2|C|293

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain E1

40S ribosomal protein S4

Chain J1

Ribosomal protein S9

Chain X1

Ribosomal protein S23