IL_7PWO_110

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_110 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.2319

The information below is about IL_4V88_406

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

7PWO|1|2|C|323
7PWO|1|2|A|324
7PWO|1|2|U|325
*
7PWO|1|2|A|332
7PWO|1|2|C|333
7PWO|1|2|G|334

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain G1

40S ribosomal protein S6

Chain V2

Ribosomal protein L23