IL_7PWO_117

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_117 not in the Motif Atlas

Geometric match to IL_3GM7_005

Geometric discrepancy: 0.1341

The information below is about IL_3GM7_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7PWO|1|2|C|524
7PWO|1|2|C|525
7PWO|1|2|G|526
*
7PWO|1|2|C|580
7PWO|1|2|C|581
7PWO|1|2|G|582

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain H1

40S ribosomal protein S7

Chain L1

SSU ribosomal protein S17P

Chain W1

Ribosomal protein S15A

Chain X1

Ribosomal protein S23