IL_7PWO_125

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

7PWO|1|2|C|711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_125 not in the Motif Atlas

Geometric match to IL_7RQB_035

Geometric discrepancy: 0.2469

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7PWO|1|2|A|620
7PWO|1|2|G|621
*
7PWO|1|2|C|710
7PWO|1|2|C|711
7PWO|1|2|U|712

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain N1

Ribosomal protein S13

Chain b1

Ribosomal protein S27