IL_7PWO_128

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUACC*GAGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_128 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.1859

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7PWO|1|2|G|637
7PWO|1|2|U|638
7PWO|1|2|A|639
7PWO|1|2|C|640
7PWO|1|2|C|641
*
7PWO|1|2|G|675
7PWO|1|2|A|676
7PWO|1|2|G|677
7PWO|1|2|A|678
7PWO|1|2|C|679

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain A2

Ribosomal protein L2

Chain B1

40S ribosomal protein S3a

Chain O1

Ribosomal protein S14