IL_7PWO_130

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGGAC*GGAUGAUC

Length

13 nucleotides

Bulged bases

7PWO|1|2|U|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_130 not in the Motif Atlas

Geometric match to IL_6UFM_001

Geometric discrepancy: 0.14

The information below is about IL_6UFM_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

7PWO|1|2|G|647
7PWO|1|2|G|648
7PWO|1|2|G|649
7PWO|1|2|A|650
7PWO|1|2|C|651
*
7PWO|1|2|G|662
7PWO|1|2|G|663
7PWO|1|2|A|664
7PWO|1|2|U|665
7PWO|1|2|G|666
7PWO|1|2|A|667
7PWO|1|2|U|668
7PWO|1|2|C|669

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain B1

40S ribosomal protein S3a

Chain O1

Ribosomal protein S14