IL_7PWO_136

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_136 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.104

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7PWO|1|2|G|853
7PWO|1|2|G|854
7PWO|1|2|A|855
7PWO|1|2|G|856
7PWO|1|2|U|857
7PWO|1|2|A|858
7PWO|1|2|U|859
7PWO|1|2|G|860
*
7PWO|1|2|U|871
7PWO|1|2|G|872
7PWO|1|2|A|873
7PWO|1|2|A|874
7PWO|1|2|A|875
7PWO|1|2|C|876

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain X1

Ribosomal protein S23

Chain n1

Ribosomal protein eL41