IL_7PWO_138

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGGA*U(OMU)G

Length

7 nucleotides

Bulged bases

7PWO|1|2|G|892

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_138 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.1614

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7PWO|1|2|C|890
7PWO|1|2|G|891
7PWO|1|2|G|892
7PWO|1|2|A|893
*
7PWO|1|2|U|1313
7PWO|1|2|OMU|1314
7PWO|1|2|G|1315

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain C1

Ribosomal protein S2

Chain a1

40S ribosomal protein S26